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At the University of Oregon (the list below may be outdated; please see or visit Jim Prell's Google Scholar page for most current list)

  1. Prell, J.S. Modelling Collisional Cross Sections, in Comprehensive Analytical Chemistry 83: Ion Mobility Spectrometry, Elsevier, Amsterdam, 2019, in press
  2. Cleary, S.P.; Li, H.; Bagal, D.; Loo, J.A.; Campuzano, I.D.G.; Prell, J.S. Extracting Charge and Mass Information from Highly Congested Mass Spectra Using Fourier-Domain Harmonics. J. Am. Soc. Mass Spectrom., 2018, DOI: 10.1007/s13361-018-2018-7 (download iFAMS here)
  3. Hartle, M.D.; Tillotson, M.R.; Prell, J.S.; Pluth, M.D. Spectroscopic Investigation of the Reaction of Metallo-Protoporphyrins with Hydrogen Sulfide. J. Inorg. Bio., 2017, 173, 152-157 DOI: 10.1016/j.jinorgbio.2017.04.021
  4. Donor, M.T.; Ewing, S.A.; Zenaidee, M.A.; Donald, W.A.; Prell, J.S. Extended Protein Ions are Formed by the Chain Ejection Model in Chemical Supercharging Electrospray Ionization. Anal. Chem. 2017, 89, 5107-5114 DOI: 10.1021/acs.analchem.7b00673
  5. Ewing, S.A.; Donor, M.T.; Wilson, J.W.; Prell, J.S. Collidoscope: An Improved Tool for Computing Collisional Cross Sections with the Trajectory Method. J. Am. Soc. Mass Spectrom.201728, 587-596 DOI: 10.1007/s13361-017-1594-2 [Focus Issue: Emerging Investigators] (download Collidoscope here)
  6. Wheeler, L.C.; Donor, M.T.; Prell, J.S.; Harms, M. J. Multiple Evolutionary Origins of Ubiquitous Cu2+ and Zn2+ Binding in the S100 Protein Family. PLOS ONE 2016, 11, e0164740 DOI: 10.1371/journal.pone.0164740
  7. Cleary, S.P.; Thompson, A.M.; Prell, J.S. Fourier Analysis Method for Analyzing Highly Congested Mass Spectra of Ion Populations with Repeated Subunits. Anal. Chem. 2016, 88, 6205-6213 DOI: 10.1021/acs.analchem.6b01088 (download iFAMS here)
  8. Taber, B.; Kislitsyn, D.A.; Gervasi, C.F.; Mills, J.M.; Rosenfield, A.E.; Zhang, L.; Mannsfeld, S.C.B.; Prell, J.S.; Briseno, A.L.; Nazin, G.V. Real-Space Visualization of Conformation-Dependent Oligothiophene Electronic Structure. J. Chem. Phys. 2016, 144, 194703 DOI: 10.1063/1.4949765
  9. Hartle, M.D.; Prell, J.S.; Pluth, M.D. Spectroscopic Investigations into the Binding of Hydrogen Sulfide to Synthetic Picket-Fence Porphyrins. J. Chem. Soc., Dalton Trans. 2016, 45, 4843-4853. DOI: 10.1039/C5DT04563K
  10. Kislitsyn, D.A.; Taber, B.; Gervasi, C.F.; Zhang, L.; Mannsfeld, S.C.B; Prell, J.S.; Briseno, A.; Nazin, G.Y. Oligothiophene Wires: Impact of Torsional Conformation on the Electron Structure. Phys. Chem. Chem. Phys. 2016, 18, 4842-4849. DOI: 10.1039/C5CP07092A

Earlier publications

  1. Zürch, M.; Chang, H.-T.; Kraus, P. M.; Cushing, S. K.; Borja, L. J.; Gandman, A.; Kaplan, C. J.; Oh, M. H.; Prell, J. S.; Prendergast, D.; Pemmaraju, C. D.; Neumark, D. M.; Leone, S. R. Carrier Trapping and Thermalization in Silicon-Germanium Alloy Probed by Attosecond XUV Transient Absorption Spectroscopy. Structural Dynamics 2017, 4, 044029 DOI: 10.1063/1.4985056
  2. Zürch, M.; Chang, H.-T.; Borja, L.J.; Kraus, P.M.; Cushing, S.K.; Gandman, A.; Kaplan, C.J.; Oh, M.H.; Prell, J.S.; Prendergast, D.; Pemmaraju, C.D.; Neumark, D.M.; Leone, S.R. Direct and Simultaneous Observation of Ultrafast Electron and Hole Dynamics in Germanium. Nature Comm. 2017, in press.
  3. Schultze, M.; Ramasesha, K.; Pemmaraju, C.D.; Sato, S.A.; Whitmore, D.; Gandman, A.; Prell, J.S.; Borja, L.; Prendergast, D.; Yabana, K.; Neumark, D.M.; Leone, S.R. Attosecond Band Gap Dynamics in Silicon. Science 2014, 346, 1348-1352. DOI: 10.1126/science.1260311
  4. Gomez, L.F.; Ferguson, K.R.; Cryan, J.P.; Bacellar, C.; Tanyag, R.M.P.; Jones, C.; Schorb, S.; Anielski, D.; Belkacem, A.; Bernando, C.; Boll, R.; Bozek, J.; Carron, S.; Chen, G.; Delmas, T.; Englert, L.; Epp, S.W.; Erk, B.; Foucar, L.; Hartmann, R.; Hexemer, A.; Huth, M.; Kwok, J.; Leone, S.R.; Ma, J.H.S.; Maia, F.R.N.C.; Malmerberg, E.; Marchesini, S.; Neumark, D.M.; Poon, B.; Prell, J.; Rolles, D.; Rudek, B.; Rudenko, A.; Seifrid, M.; Siefermann, K.R.; Sturm, F.P.; Swiggers, M.; Ulrich, J.; Weise, F.; Zwart, P.; Bostedt, C.; Gessner, O.; Vilesov, A.F. Shapes and Vorticities of Superfluid Helium Droplets. Science 2014, 345, 906-909. DOI: 10.1126/science.1252395
  5. Prell, J.S.; Borja, L.J.; Neumark, D.M.; Leone, S.R. Simulation of Attosecond-Resolved Imaging of the Plasmon Electric Field in Metallic Nanoparticles. Ann. Phys.—Berlin 2013, 525, 151-161.
  6. Nagel, P.M.; Robinson, J.S.; Harteneck, B.; Pfeifer, T.; Abel, M.J.; Prell, J.S.; Neumark, D.M.; Kaindl, R.A.; Leone, S.R. Surface Plasmon Assisted Electron Acceleration in Photoemission from Gold Nanopillars. Chem. Phys. 2013, 414, 106-111.
  7. Chang, T.M.; Prell, J.S.; Warrick, E.R.; Williams, E.R. Where’s the Charge? Protonation Sites in Gaseous Ions Change with Hydration. J. Am. Chem. Soc. 2012, 134, 15805-15813.
  8. Sterling, H.J; Prell, J.S.; Cassou, C.A.; Williams, E.R. Protein Conformation and Supercharging with DMSO from Aqueous Solution. J. Am. Soc. Mass Spectrom. 2011, 22, 1178–1186.
  9. Prell, J.S.; Chang, T.M.; Biles, J.A.; Berden, G.; Oomens, J.; Williams, E.R. Isomer Population Analysis of Gaseous Ions from Infrared Multiple Photon Dissociation Spectroscopy. J. Phys. Chem. A 2011, 115, 2745–2751.
  10. Prell, J.S.; O’Brien, J.T.; Williams, E.R. Structural and Electric Field Effects of Ions in Aqueous Nanodrops. J. Am. Chem. Soc. 2011, 133, 4810–4818.
  11. Prell, J.S.; Correra, T.C.; Chang, T.M.; Biles, J.A.; Williams, E.R. Entropy Drives a Water Molecule from the C- to N-Terminus on Protonated Proline. J. Am. Chem. Soc. 2010, 132, 14733–14735.
  12. O’Brien, J.T.; Prell, J.S.; Berden, G.; Oomens, J.; Williams, E.R. Effects of Anions on the Zwitterion Stability of Glu, His, and Arg Investigated by IRMPD Spectroscopy and Theory. Int. J. Mass Spectrom. 2010, 297, 116–123.
  13. O’Brien, J.T.; Prell, J.S.; Williams, E.R. Sulfate Ion Patterns Water at Long Distance. J. Am. Chem. Soc. 2010, 132, 8248–8249.
  14. Prell, J.S.; Chang, T.M.; O’Brien, J.T.; Williams, E.R. Hydration Isomers of Protonated Phenylalanine and Derivatives: Relative Stabilities from Infrared Photodissociation. J. Am. Chem. Soc. 2010132, 7811–7819.
  15. Prell, J.S.; O’Brien, J.T.; Williams, E.R. IRPD Spectroscopy and Ensemble Measurements: Effects of Different Data Acquisition and Analysis Methods. J. Am. Soc. Mass Spectrom. 2010, 21, 800–809.
  16. Prell, J.S.; Flick, T.G.; Oomens, J.; Berden, G.; Williams, E.R. Coordination of Trivalent Metal Cations to Peptides: Results from IRMPD Spectroscopy and Theory. J. Phys. Chem. A 2010, 114, 854–860.
  17. Bush, M.F.; O’Brien, J.T.; Prell, J.S.; Wu, C.; Saykally, R.J.; Williams, E. R. Hydration of Alkaline Earth Metal Dications: Effects of Metal Ion Size Determined Using Infrared Action Spectroscopy. J. Am. Chem. Soc. 2009, 131, 13270–13277.
  18. Donald, W.A.; Leib, R.D.; Demireva, M.; O’Brien, J.T.; Prell, J.S.; Williams, E.R. Directly Relating Reduction Energies of Gaseous Eu(H2O)n3+, n = 55-140, to Aqueous Solutions: The Absolute SHE Potential and Real Proton Solvation Energy. J. Am. Chem. Soc. 2009, 131, 13328–13337.
  19. Prell, J.S.; O’Brien, J.T.; Steill, J.D.; Oomens, J.; Williams, E.R. Structures of Protonated Dipeptides: The Role of Arginine in Stabilizing Salt Bridges. J. Am. Chem. Soc. 2009131, 11442–11449.
  20. Prell, J.S.; Williams, E.R. Structures of Thermal, Mass-Selected Water Clusters Probed with Hydrophobic Ion Tags and Infrared Photodissociation Spectroscopy. J. Am. Chem. Soc. 2009131, 4110–4119.
  21. O’Brien, J.T.; Prell, J.S.; Steill, J.D.; Oomens, J.; Williams, E.R. Changes in Binding Motif of Protonated Heterodimers Containing Valine Investigated Using IRMPD Spectroscopy between 800 and 3700 cm−1 and Theory. J. Am. Chem. Soc. 2009131, 3905-3912.
  22. Prell, J.S.; Demireva, M.; Williams, E.R. Role of Sequence in Salt-Bridge Formation for Alkali Metal Cationized GlyArg and ArgGly Investigated with IRMPD Spectroscopy and Theory. J. Am. Chem. Soc. 2009131, 1232–1242.
  23. O’Brien, J.T.; Prell, J.S.; Steill, J.D.; Oomens, J.; Williams, E.R. Interactions of Mono- and Divalent Metal Cations with Aspartic and Glutamic Acid Investigated with Infrared Photodissociation Spectroscopy and Theory. J. Phys. Chem. A 2008112, 10823–10830.
  24. Prell, J.S.; O’Brien, J.T.; Holm, A.I.S.; Leib, R.D.; Donald, W.A.; Williams, E.R. Electron Capture Dissociation by a Hydrated Gaseous Peptide: Effects of Water on Fragmentation and Molecular Survival. J. Am. Chem. Soc. 2008130, 12680–12689.
  25. O’Brien, J.T.; Prell, J.S.; Holm, A.I.S.; Williams, E.R. Effects of Electron Kinetic Energy and Ion-Electron Inelastic Collisions in Electron Capture Dissociation Measured Using Ion Nanocalorimetry. J. Am. Soc. Mass Spectrom. 200819, 772–779.
  26. Bush, M.F.; Prell, J.S.; Saykally, R.J.; Williams, E.R. One Water Molecule Stabilizes the Cationized Arginine Zwitterion. J. Am. Chem. Soc. 2007129, 13544–13553.
  27. Bush, M.F.; O’Brien, J.T.; Prell, J.S.; Saykally, R.J.; Williams, E.R. Infrared Spectroscopy of Cationized Arginine in the Gas Phase: Direct Evidence for the Transition from Nonzwitterionic to Zwitterionic Structure. J. Am. Chem. Soc. 2007129, 1612–1622.
  28. Gaspar, P.P.; Liu, X.P.; Ivanova, D.; Read, D.; Prell, J.S.; Gross, M.L. Four Valence-Electron Reactive Intermediates and the Philicity of Charged Carbene Analogs. Modern Aspects of Main Group Chemistry 2006917, 52–65.